shimming-toolbox / shimming-toolbox / 16325294763

90%

Build Type

push

github

Committed by web-flow

Commit Message

NiftiFile class (#614)

* Base for NiftiFile class

* complete basic functions

* small fixes

* add tests

* refactor dynamic()

* refactor dynamic

* tmp for tests

* small fix

* Fix some tests

* Fix last dynamic tests

* Update shimming-toolbox/shimmingtoolbox/cli/b0shim.py

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Update shimming-toolbox/shimmingtoolbox/files/file.py

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* fix file tests

* Change nii_name to nif_name

* add get_fat_sat_options to NiftiAnatomical

* chnage nii.data

* get_manufacturer_model_name --> get_manufacturers_model_name

* change function name

* Remove duplicate

* Remove uncesseary code

* Update shimming-toolbox/shimmingtoolbox/load_nifti.py

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Move to multiple files

* Separate test files

* REfactor tests

* temp

* Fix dynamic sequencer tests

* quick fix

* change directory in test_sequencer

* Fix path issues created by changing anat to target

* fix tests fails in load_nifty

* Refactor Realt time shimming, fix rt cli tests, remove obsolete code

* fix test optimizer and sequencer

* Fix last tests

* Fix docs

* change anat to target

* fixes for convert anat -> target

* fix dcm2niix tests

* Remove obsolete function shim_settings:get_scanner_shim_settings()

* Update CHANGES.md

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Update docs/source/user_section/tutorials/b1_shimming.rst

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Update shimming-toolbox/CHANGES.md

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Update shimming-toolbox/shimmingtoolbox/cli/b0shim.py

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com>

* Update shimming-toolbox/shimmingtoolbox/cli/b0shim.py

Co-authored-by: Alex Dastous <47249340+po09i@users.noreply.github.com... (continued)

Run Details

486 of 515 new or added lines in 9 files covered. (94.37%)

51 existing lines in 8 files now uncovered.

5448 of 6111 relevant lines covered (89.15%)

4.46 hits per line