Clinical-Genomics / cg / 16188663991

86%

Build Type

push

github

Committed by web-flow

Commit Message

replace microsalt cli commands (#4499)(major)

## Description
Replace the production microsalt CLI commands with the dev commands from the pipeline integration project

### Added

- Tests for  microsalt`start` and `start-available` CLI commands

### Changed

- Use only `@click.pass_obj` instead of `@click.pass_context` in new CLI commands
- Remove old CLI commands
- Removed tests and fixtures for previous CLI commands
Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>

Run Details

22 of 22 new or added lines in 1 file covered. (100.0%)

60 existing lines in 2 files now uncovered.

1636 of 2196 relevant lines covered (74.5%)

12.57 hits per line