Clinical-Genomics / cg / 15965485194

86%

Build Type

push

github

Committed by web-flow

Commit Message

add error handling to fastq clean (#4206)(patch)

## Description
Closes #3817 
Adds error handling to the CLI command `cg compress clean fastq` so that any exception raised when cleaning a single sample is caught and logged without affecting the cleaning of other samples. Additionally, adds a check that verifies that a sample is not part of a newer case before cleaning.

### Added

- Error handling

### Changed
- The way samples to clean are fetched, now we verify if they belong to a case that is not cleanable.

Co-authored-by: eliott <eliottob6@gmail.com>
Co-authored-by: EliottBo <112384714+eliottBo@users.noreply.github.com>

Run Details

27 of 36 new or added lines in 3 files covered. (75.0%)

1 existing line in 1 file now uncovered.

27701 of 32317 relevant lines covered (85.72%)

0.86 hits per line