Clinical-Genomics / cg / 15896366399

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github

DEV - Start pipelines (#4227) (major)

### Added

- microSALT CLI commands `dev-run`, `dev-start` and `dev-start-available`
- AnalysisStarter
- AnalysisStarterFactory
- ConfiguratorFactory
- Configurator (Parent)
- MicrosaltConfigurator (Child)
- NextflowConfigurator (Child)
- MicrosaltConfigFileCreator
- RarediseaseConfigFileCreator
- RarediseaseParamsFileCreator
- ManagedVariantsFileCreator
- GenePanelsFileCreator
- PipelineExtension (Parent)
- RarediseaseExtension (Child)
- InputFetcher (Parent)
- FastqFetcher (Child)
- Submitter (Parent)
- SubprocessSubmitter (Child)
- SeqeraPlatformSubmitter (Child)
- SeqeraPlatformClient
- Tracker (Parent)
- MicrosaltTracker (Child)
- NextflowTracker (Child)
- Tests

972 of 1138 new or added lines in 46 files covered. (85.41%)

0 of 0 relevant lines covered (NaN%)

0.0 hits per line