axondeepseg / axondeepseg / 15792196907

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Pre-release changes for 5.1.0 (#903)

* Refactor handling of missing model folder for plugin

* Add link to test image, shorten citation box

* Try tests on pypi install

* Add manual dowload models and tests

* Force download tests if tests are run that requires them

* Upgrade pip

* Debug

* Debug

* Debug

* Debug

* Debug

* Debug

* Try with latest torch

* Unlock nnunet

* Try release without pinned torch

* Add cgi dep explicitely

* Refactor CGI

* Find missing test folder

* Fix reimplementation via re:

* Debug mac python version

* Debug mac python version

* Debug ads download tests

* Debug ads download tests

* Debug ads download tests

* Debug ads download tests

* Fix download_tests

* Run normal tests

* Run normal tests

* Run normal tests

* Restore torch pin, implement stricter python versions

* Fix python versionning

* Fix test yaml for python versionning

* Fix test yaml for python versionning

* Fix test yaml for python versionning

* Fix test yaml for python versionning

* handle hash issueg

* Remove auto-download test files in testing modules

* More cleanup (mostly spaces)

* More cleanup (mostly spaces)

* Try resolving ads utils errors again

* remove editable

* Debug pytest

* run test files one at a time

* Bad link

* Download models manualls & double up on them package/local, for download tests too

* Fix download tests (was downloading it twice), fix destinations

* It's download model, not models. Also, fix wrong import

* Start with just the simplest test - simulate axon

* Remove typo

* add test params

* Add test download model cards; print default downloading locations

* Add test colorization

* Add segmentation scoring

* Remove downloaded package to for pip

* Push new pypi upload

* Fix windows test bug; add test_merge_masks

* Add test launch performance metrics

* Add test launch morphometrics computation

* Add test compute morphometrics

* Add test postprocessing

* Add test download tests

* Add dow... (continued)

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