shimming-toolbox / shimming-toolbox / 15453396578

90%

Build Type

push

github

Committed by web-flow

Commit Message

Improve realtime shimming (#482)

* Use different pressures for the different slices of the fieldmap

* Add MPRAGE to dcm2bids config file

* Fix pmu test

* Add better parsing of slice timing

* Fix tests

* Fix another test

* Add number of slices

* Add new plot

* Fix pmu test

* Remove masked realtime plot, calculate the correction on the original fieldmap

* Fix bug

* Allow slice timing to be used even for 1 slice acquisitions

* Add fourier

* Fix dcm2bids congig file

* Add todos

* Update coil config file and use it in a test, also update the --coil option to use it (#512)

* Add option to return timing from different times and add function to return trigger times in the PMU

* Minor fix in load_nifti

* Use first echo for creating fieldmap JSON file

* Debug messages

* Better code

* remove duplicate mprage in dcm2bids, convert warnings to errors

* Revert to warnings

* Add gzip to the list of excluded loggers when set by set_all_loggers

* Add option to specify a time offset between the PMU and dicom acquisition time

* Fix tests

* Quick fix

* Use mean pressure from the acquisition

* Apply suggestions from code review

Co-authored-by: 4rnaudB <55560824+4rnaudB@users.noreply.github.com>

* Remove redundant MPRAGE from dcm2bids config file

* Update PMU from code review

* Code review

* XA60 .resp files have other data, not only triggers

* Fix tests

* Try using setters and getters for pmu data and start and stop times

* FIx test errors

* quick fix

* Fic all tests but one

* Fix last test

* Better message for fieldmapping

* Small fixes according to code review

---------

Co-authored-by: 4rnaudB <55560824+4rnaudB@users.noreply.github.com>
Co-authored-by: Arnaud Breheret <arnaudbreheret14@gmail.com>

Run Details

410 of 451 new or added lines in 9 files covered. (90.91%)

1 existing line in 1 file now uncovered.

5701 of 6354 relevant lines covered (89.72%)

4.49 hits per line