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griffithlab / pVACtools / 15443210144
86%
master: 84%

LAST BUILD BRANCH: 7.0.0_bugfixes
DEFAULT BRANCH: master
Ran
Jobs 1
Files 148
Run time 3min
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coverage: 85.768% (+2.5%) from 83.282%
15443210144

Pull #1203

github

web-flow 
Merge 19d2f606d into 36a710b08
Pull Request #1203: Integrated pVACcompare into pVACtools

540 of 656 new or added lines in 19 files covered. (82.32%)

79 existing lines in 12 files now uncovered.

8401 of 9795 relevant lines covered (85.77%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.06
 pvactools/tools/pvaccompare/comparisons/compare_aggregated_tsv.py
2
91.3
 pvactools/tools/pvaccompare/runners/run_compare_aggregated_tsv.py
2
83.33
 pvactools/tools/pvaccompare/runners/run_compare_json.py
2
91.67
 pvactools/tools/pvaccompare/runners/run_compare_reference_matches_tsv.py
2
90.0
 pvactools/tools/pvaccompare/runners/run_compare_unaggregated_tsv.py
4
86.67
 pvactools/tools/pvaccompare/comparisons/compare_reference_matches_tsv.py
4
75.0
 pvactools/tools/pvaccompare/runners/run_compare_yml.py
9
84.21
 pvactools/tools/pvaccompare/comparisons/compare_yml.py
12
94.39
 pvactools/tools/pvaccompare/run_utils.py
20
25.93
 pvactools/tools/pvaccompare/server.py
27
51.79
 pvactools/tools/compare.py
31
61.73
 pvactools/tools/pvaccompare/compare_tools/comparison_router.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.14
 3.43% pvactools/lib/calculate_reference_proteome_similarity.py
4
80.43
 80.43% pvactools/tools/pvacbind/main.py
4
60.87
 60.87% pvactools/tools/pvacview/main.py
5
94.32
 -2.11% pvactools/lib/fasta_to_kmers.py
5
79.49
 0.0% pvactools/tools/pvacseq/run.py
5
74.49
 53.06% pvactools/tools/pvacsplice/generate_protein_fasta.py
6
85.12
 0.0% pvactools/tools/pvacsplice/run.py
7
82.35
 0.72% pvactools/tools/pvacfuse/main.py
7
83.93
 0.6% pvactools/tools/pvacseq/main.py
9
83.33
 1.33% pvactools/tools/pvacsplice/main.py
11
92.06
 0.4% pvactools/lib/post_processor.py
15
83.52
 -0.28% pvactools/tools/pvacfuse/run.py
Jobs
ID Job ID Ran Files Coverage
1 15443210144.1 148
85.77
 GitHub Action Run
Source Files on build 15443210144