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Clinical-Genomics / cg / 15412387539
86%

Build:
DEFAULT BRANCH: master
Ran 03 Jun 2025 08:31AM UTC
Jobs 1
Files 835
Run time 362min
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03 Jun 2025 08:28AM UTC coverage: 85.85% (+3.2%) from 82.642%
15412387539

push

github

web-flow
Add manual marking for cases sent to top-up (#4399) (major)

### Added
* Add new value for case action: top-up, set this value on a case to mark it for top up

* Analysis row in StatusDB created at the start of analysis instead of on completion

* Link analysis in StatusDB with analysis in Trailblazer by adding the column `trailblazer_id` to the table in StatusDB

140 of 149 new or added lines in 22 files covered. (93.96%)

15 existing lines in 5 files now uncovered.

26690 of 31089 relevant lines covered (85.85%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
88.52
-0.23% cg/meta/workflow/nf_analysis.py
2
67.42
4.46% cg/cli/workflow/microsalt/base.py
2
92.25
-0.06% cg/cli/workflow/mip/base.py
4
45.19
0.0% cg/cli/workflow/mutant/base.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
92.25
-0.06% cg/cli/workflow/mip/base.py
1
88.52
-0.23% cg/meta/workflow/nf_analysis.py
3
88.42
-0.86% cg/meta/workflow/balsamic.py
5
86.85
3.28% cg/meta/workflow/analysis.py
5
72.37
-2.8% cg/meta/workflow/mip.py
Jobs
ID Job ID Ran Files Coverage
1 15412387539.1 03 Jun 2025 08:31AM UTC 835
85.85
GitHub Action Run
Source Files on build 15412387539
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  • List 835
  • Changed 24
  • Source Changed 0
  • Coverage Changed 24
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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