15412387539
86%

Ran 03 Jun 2025 08:31AM UTC

Jobs 1

Files 835

Run time 362min

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Committed 03 Jun 2025 08:28AM UTC coverage: 85.85% (+3.2%) from 82.642%

Build # 15412387539

Build Type

push

github

Committed by

web-flow

Commit Message

Add manual marking for cases sent to top-up (#4399) (major)

### Added
* Add new value for case action: top-up, set this value on a case to mark it for top up

* Analysis row in StatusDB created at the start of analysis instead of on completion

* Link analysis in StatusDB with analysis in Trailblazer by adding the column `trailblazer_id` to the table in StatusDB

Run Details

140 of 149 new or added lines in 22 files covered. (93.96%)

15 existing lines in 5 files now uncovered.

26690 of 31089 relevant lines covered (85.85%)

0.86 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	88.52	-0.23%	cg/meta/workflow/nf_analysis.py
2	67.42	4.46%	cg/cli/workflow/microsalt/base.py
2	92.25	-0.06%	cg/cli/workflow/mip/base.py
4	45.19	0.0%	cg/cli/workflow/mutant/base.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	92.25	-0.06%	cg/cli/workflow/mip/base.py
1	88.52	-0.23%	cg/meta/workflow/nf_analysis.py
3	88.42	-0.86%	cg/meta/workflow/balsamic.py
5	86.85	3.28%	cg/meta/workflow/analysis.py
5	72.37	-2.8%	cg/meta/workflow/mip.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	15412387539.1	03 Jun 2025 08:31AM UTC	835	85.85	GitHub Action Run

Clinical-Genomics / cg / 15412387539
86%

README BADGES
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New Missed Lines in Diff

Uncovered Existing Lines

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Source Files on build 15412387539

Clinical-Genomics / cg / 15412387539 86%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 15412387539

Clinical-Genomics / cg / 15412387539
86%

README BADGES
x