jlab / rust-debruijn / 14642889194

87%

Build Type

push

github

Committed by web-flow

Commit Message

Merge pull request #15 from jlab/dev

Paired & Stranded reads

paired: 
- `ReadsPaired` stuct to store up to three `Reads` in and how they are paired
- methods to iterate over the reads

stranded: 
- `Stranded` enum stored in `Reads` stuct
- adaption of `filter_kmers` and `filter_kmers_parallel` to 
   - keep forward reads as they are
   - reverse  complement reverse reads
   - min rc unstranded reads

fix:
- add `DebruijnGraph::fix_edge_mults` to remove multiplicities of filtered nodes

Run Details

376 of 407 new or added lines in 8 files covered. (92.38%)

21 existing lines in 3 files now uncovered.

6598 of 7782 relevant lines covered (84.79%)

3856402.94 hits per line