broadinstitute / cromwell / 9054
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Files 210
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Merge pull request #1252 from broadinstitute/sfs_custom_commands

SFS Config supports arbitrary runtime attributes. Closes #1217

279 of 279 new or added lines in 21 files covered. (100.0%)

3653 of 5374 relevant lines covered (67.98%)

0.68 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 backend/src/main/scala/cromwell/backend/BackendInitializationData.scala
1
100.0
 backend/src/main/scala/cromwell/backend/BackendJobExecutionActor.scala
1
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/sfs/SharedFileSystemBackendLifecycleActorFactory.scala
2
100.0
 backend/src/main/scala/cromwell/backend/validation/RuntimeAttributesValidation.scala
2
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/sfs/config/ConfigBackendLifecycleActorFactory.scala
5
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/sfs/config/ConfigWdlNamespace.scala
5
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/sfs/SharedFileSystemJobExecutionActor.scala
6
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/local/LocalBackendLifecycleActorFactory.scala
6
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/sfs/SharedFileSystemAsyncJobExecutionActor.scala
8
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/sfs/config/ConfigAsyncJobExecutionActor.scala
13
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/sfs/config/PrimitiveRuntimeAttributesValidation.scala
34
100.0
 supportedBackends/sfs/src/main/scala/cromwell/backend/impl/sfs/config/DeclarationValidation.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 filesystems/gcs/src/main/scala/cromwell/filesystems/gcs/GoogleAuthMode.scala
1
100.0
 core/src/main/scala/cromwell/core/ConfigUtil.scala
1
100.0
 database/src/main/scala/cromwell/database/liquibase/LiquibaseUtils.scala
1
100.0
 supportedBackends/jes/src/main/scala/cromwell/backend/impl/jes/JesInitializationActor.scala
1
100.0
 database/src/main/scala/cromwell/database/slick/SlickDatabase.scala
1
100.0
 engine/src/main/scala/cromwell/engine/workflow/lifecycle/execution/WorkflowExecutionActor.scala
1
100.0
 backend/src/main/scala/cromwell/backend/BackendJobExecutionActor.scala
1
100.0
 filesystems/gcs/src/main/scala/cromwell/filesystems/gcs/GcsFileSystem.scala
1
100.0
 backend/src/main/scala/cromwell/backend/io/WorkflowPaths.scala
1
100.0
 services/src/main/scala/cromwell/services/metadata/MetadataService.scala
2
100.0
 filesystems/gcs/src/main/scala/cromwell/filesystems/gcs/NioGcsPath.scala
2
100.0
 supportedBackends/jes/src/main/scala/cromwell/backend/impl/jes/JesRuntimeAttributes.scala
2
100.0
 backend/src/main/scala/cromwell/backend/BackendLifecycleActor.scala
3
100.0
 core/src/main/scala/cromwell/core/logging/LoggerWrapper.scala
4
100.0
 backend/src/main/scala/cromwell/backend/BackendWorkflowInitializationActor.scala
7
100.0
 core/src/main/scala/cromwell/core/PathFactory.scala
Jobs
ID Job ID Ran Files Coverage
1 9054.1 (BUILD_TYPE=sbt) 0
67.98
 Travis Job 9054.1
Source Files on build 9054
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