111: 82%

Ran 02 May 2014 11:51AM UTC

Jobs 1

Files 272

Run time 22s

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Build # 147

Build Type

push

travis-ci

Committed by

andrewyatz

Commit Message

Support alternative methods of sequence storage & indexing.

We have two sets of changes here. The first supports the use of alternative stores of sequence data but still providing the sequence caching framework meaning repeated requests for a similar region will not incur a cost of going back to the original data store.

The second change is writing in native Perl support for samtool's FAIDX code. This includes indexing the FASTA files and providing access to the uncompressed files. Our new indexing code is available as a SequenceAdaptor implementation.

Run Details

24429 of 33194 relevant lines covered (73.59%)

571.07 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	147.1 (COVERALLS=true DB=mysql)	02 May 2014 11:51AM UTC	272	73.59	Travis Job 147.1

Source Files on build 147

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Ensembl / ensembl / 147
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release/111: 82%

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Ensembl / ensembl / 147 75% release/111: 82%

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Ensembl / ensembl / 147
75%
release/111: 82%

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