biocore / metagenomics_pooling_notebook / 14522160753
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Support arbitrary compression layouts (#289)

* Initial tellseq sample sheet support (#251)

* Update main.yml w seqtk>=1.4

* Add missing quotes

* strip leading zeroes from tubecodes in visionmate plate maps and sample accession files

* ugh missing test files

* WIP tellseq

* test updates for strip leading zeroes from tubecode

* Remove invalid comma in json left over from manual merge

* Update notebook output files for tubecode zero stripping

* Update notebook output files for tubecode zero stripping

* lint fixes

* tellseq sample sheets

* lint fix

* Short-term lane-setting solution possibility (#252)

* proposed lane-setting approach for short-term

* proposed lane-setting approach for short-term

* Tellseq notebooks (#253)

* Update main.yml w seqtk>=1.4

* Add missing quotes

* strip leading zeroes from tubecodes in visionmate plate maps and sample accession files

* ugh missing test files

* WIP tellseq

* test updates for strip leading zeroes from tubecode

* Remove invalid comma in json left over from manual merge

* Update notebook output files for tubecode zero stripping

* Update notebook output files for tubecode zero stripping

* lint fixes

* tellseq sample sheets

* lint fix

* WIP: notebook support

* WIP: notebook support

* WIP: notebook support

* WIP: notebook support

* WIP: notebook support

* WIP: notebook support

* Changes from wet lab walkthrough

* Remove unused constant

* Remove outdated test file

* Remove outdated test file

* Pinning dependencies to latest versions (#254)

* Tellseq absquant notebook test files (#256)

* Tellseq absquant notebook test files

* code review changes

* one more absquant test file

* WIP: support for more than 2 dilutions

* WIP: split notebook A into two

* Empty notebook outputs

* absquant notebook test files for new A-D notebooks

* csv stored as txt fix

* change default sequencer to NovaSeqXPlus

* changes to ... (continued)

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