98: 63%

Ran 04 Aug 2016 09:39PM UTC

Jobs 1

Files 156

Run time 9s

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Build # 997

Build Type

push

travis-ci

Committed by

muffato

Commit Message

Merge branch 'master' into feature/wga_polyploid

* master:
  Simply use what regions() returns
  We need at least 1 region for the alignment
  The parameter must be defined
  Initialize the variable to an empty array
  It seems we need to import it sometimes
  Use GenomeDBFactory and genome_db_id
  This analysis doesn't require LOCAL
  make_species_tree can start earlier
  Populate the species-set with pure SQL
  The genome_db table is cleaned up at the previous line
  This parameter is mandatory
  "newick_format" is not needed in MakeSpeciesTree any more
  Copy the GenomeDB info to the leaves
  Keep the connetion to the core db open as long as we need it
  Should disconnect before running ortheus too
  disconnect_if_idle() is preferred over disconnect_when_inactive(1/0)
  Added a copy() method to make the Pecan runnable work (otherwise the SpeciesTreeNode fields are not copied)
  typo: there was a trailing space
  species_set_header has to be cleaned-up last

Run Details

10761 of 17806 relevant lines covered (60.43%)

506.53 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	997.1 (COVERALLS=true)	04 Aug 2016 09:39PM UTC	0	60.43	Travis Job 997.1

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release/98: 63%

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