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iqtree / piqtree / 13985423968
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Build:
DEFAULT BRANCH: main
Ran 21 Mar 2025 05:43AM UTC
Jobs 6
Files 35
Run time 1min
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21 Mar 2025 05:40AM UTC coverage: 98.746% (+0.02%) from 98.731%
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ENH: provide piqtree_nj and nj_tree option for positive branch lengths (#165)

* ENH: parameter to restrict negative value of branch length

* TST: allow_negative correctly control the behavior of branch length in nj_tree

* ENH: add parameter allow_negative in piqtree_nj app

* MAINT: fix double return error in merge

* MAINT: ruff formatting

* TST: Use full fasta file for checking `nj_tree` negative branch lengths

* MAINT: move from `ArrayAlignment` to `Alignment` in preparation for `new_type` default

* MAINT: simplify logic for negative branch lengths

* MAINT: Sort fixtures by number of taxa

* MAINT: Remove unused test data file

---------

Co-authored-by: Robert McArthur <robert.mcarthur@anu.edu.au>

35 of 35 new or added lines in 8 files covered. (100.0%)

1181 of 1196 relevant lines covered (98.75%)

5.92 hits per line

Jobs
ID Job ID Ran Files Coverage
1 run-3.11-ubuntu-latest - 13985423968.1 21 Mar 2025 05:42AM UTC 35
98.75
GitHub Action Run
2 run-3.12-ubuntu-latest - 13985423968.2 21 Mar 2025 05:43AM UTC 35
98.75
GitHub Action Run
3 run-3.12-macos-14 - 13985423968.3 21 Mar 2025 05:43AM UTC 35
98.75
GitHub Action Run
4 run-3.11-macos-14 - 13985423968.4 21 Mar 2025 05:43AM UTC 35
98.75
GitHub Action Run
5 run-3.13-ubuntu-latest - 13985423968.5 21 Mar 2025 05:43AM UTC 35
98.75
GitHub Action Run
6 run-3.13-macos-14 - 13985423968.6 21 Mar 2025 05:43AM UTC 35
98.75
GitHub Action Run
Source Files on build 13985423968
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  • Changed 9
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  • Coverage Changed 5
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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