98: 63%

Ran 03 Aug 2016 09:29AM UTC

Jobs 1

Files 149

Run time 8s

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Build # 987

Build Type

push

travis-ci

Committed by

muffato

Commit Message

Merge branch 'master' into feature/wga_polyploid

* master: (24 commits)
  Added an option to use a genome for a whole clade
  Added some checks for left/right_index
  set_internal_ids is not used any more
  Adding even more wait_for rules
  Adding wait_for loop to improve pipeline efficiency.
  Adding new resurce class for long jobs.
  Adding more wait_for rules to ensure that things don't start too early
  Deprecated MLSS::species_set_obj
  bugfix: was supposed to use the genome_db_id there
  The orthology stats don't depend on dnds stuff, and can start earlier
  Factorized the SQL queries
  docfix
  Made a base-runnable for blast-factories. BlastFactoryUnannotatedMembers can now use specific parameters for short proteins.
  The base runnable is now aware of a member_id_list
  Added staging to reg conf
  Removed merge error duplicates
  typo
  Adaptors can be defined outside of the loop
  These things should happen only once we've passed the hc and qc analyses
  The "chunk_by_size" is now an internal parameter dependant on "all_blast_params"
  ...

Conflicts:
	modules/Bio/EnsEMBL/Compara/PipeConfig/PairAligner_conf.pm

Run Details

10138 of 17036 relevant lines covered (59.51%)

518.46 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	987.1 (COVERALLS=true)	03 Aug 2016 09:29AM UTC	0	59.51	Travis Job 987.1

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