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openbraininstitute / neurodamus / 13568878562
90%

Build:
DEFAULT BRANCH: main
Ran 27 Feb 2025 02:36PM UTC
Jobs 2
Files 48
Run time 1min
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27 Feb 2025 02:36PM UTC coverage: 60.474% (+0.05%) from 60.427%
13568878562

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Quell more lints (#109)

Fixed the following, so we don't need to ignore them:
* "PLC2801",# unnecessary-dunder-call
* "FURB103",# write-whole-file
* "FURB122",# for-loop-writes
* "B006", # mutable-argument-default
* "E741",   # ambiguous-variable-name
* "D104",   # undocumented-public-package
* "D212",   # multi-line-summary-first-line
* "PLC0205",# single-string-slots
* "FURB101",# read-whole-file
* "B019", # cached-instance-method
* "A001", # builtin-variable-shadowing
* "PERF102",# incorrect-dict-iterator
* "PLE1141",# dict-iter-missing-items
* "ARG005", # unused-lambda-argument
* "ARG003", # unused-class-method-argument
* "TRY401", # verbose-log-message


Moved ignoring the docs one to a different ticket
(https://github.com/openbraininstitute/neurodamus/issues/108) to make
this more manageable.

10 of 42 new or added lines in 11 files covered. (23.81%)

3265 existing lines in 37 files now uncovered.

5465 of 9037 relevant lines covered (60.47%)

0.84 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
23.57
-25.0% neurodamus/cell_distributor.py
1
25.53
-35.93% neurodamus/connection.py
1
18.52
-71.6% neurodamus/morphio_wrapper.py
1
22.64
-49.28% neurodamus/target_manager.py
2
17.86
0.0% neurodamus/commands.py
2
50.0
-23.08% neurodamus/utils/compat.py
3
25.72
0.0% neurodamus/ngv.py
3
22.19
-6.94% neurodamus/utils/memory.py
4
29.8
-45.08% neurodamus/core/configuration.py
4
22.54
-1.74% neurodamus/stimulus_manager.py
10
14.15
-34.54% neurodamus/node.py

Uncovered Existing Lines

Lines Coverage ∆ File
2
29.21
-2.25% neurodamus/modification_manager.py
3
40.0
-4.29% neurodamus/gap_junction.py
5
50.0
-23.08% neurodamus/utils/compat.py
7
71.05
-18.42% neurodamus/core/mechanisms.py
7
38.57
-10.0% neurodamus/core/_shmutils.py
7
41.79
-10.45% neurodamus/core/_utils.py
7
20.0
-12.73% neurodamus/lfp_manager.py
7
22.54
-1.74% neurodamus/stimulus_manager.py
10
52.73
-18.18% neurodamus/core/_engine.py
16
5.56
-88.89% neurodamus/utils/cli.py
19
39.44
-26.76% neurodamus/core/_mpi.py
19
31.65
-24.05% neurodamus/replay.py
22
19.51
-53.66% neurodamus/core/random.py
24
22.19
-6.94% neurodamus/utils/memory.py
28
40.0
-28.0% neurodamus/utils/timeit.py
35
37.31
-52.24% neurodamus/core/_neurodamus.py
37
39.32
-31.62% neurodamus/utils/pyutils.py
43
31.17
-55.84% neurodamus/utils/logging.py
51
25.98
-40.16% neurodamus/utils/progressbar.py
57
35.71
-58.16% neurodamus/utils/multimap.py
70
0.0
-100.0% neurodamus/utils/dump_cellstate.py
73
23.42
-46.2% neurodamus/core/coreneuron_configuration.py
74
33.14
-43.79% neurodamus/core/_neuron.py
79
11.73
-48.77% neurodamus/io/cell_readers.py
83
34.33
-41.29% neurodamus/metype.py
92
31.65
-42.2% neurodamus/core/cell.py
115
18.52
-71.6% neurodamus/morphio_wrapper.py
136
27.2
-56.9% neurodamus/core/nodeset.py
137
24.64
-49.64% neurodamus/io/synapse_reader.py
149
23.57
-25.0% neurodamus/cell_distributor.py
152
25.53
-35.93% neurodamus/connection.py
172
22.64
-49.28% neurodamus/target_manager.py
177
20.49
-72.54% neurodamus/io/sonata_config.py
206
20.16
-79.84% neurodamus/core/stimuli.py
350
29.8
-45.08% neurodamus/core/configuration.py
395
14.15
-34.54% neurodamus/node.py
399
17.1
-60.36% neurodamus/connection_manager.py
Subprojects
ID Flag name Job ID Ran Files Coverage
1 baseline 13568878562.1 27 Feb 2025 02:36PM UTC 48
24.3
GitHub Action Run
2 unit 13568878562.2 27 Feb 2025 02:37PM UTC 48
60.09
GitHub Action Run
Source Files on build 13568878562
  • Tree
  • List 48
  • Changed 12
  • Source Changed 12
  • Coverage Changed 7
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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