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griffithlab / pVACtools / 13435713044
86%
master: 84%

LAST BUILD BRANCH: issue_1349
DEFAULT BRANCH: master
Ran
Jobs 1
Files 143
Run time 1min
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coverage: 82.215% (-1.2%) from 83.463%
13435713044

Pull #1203

github

web-flow 
Merge e86dace49 into 7d2a69da3
Pull Request #1203: Integrated pVACcompare into pVACtools

421 of 587 new or added lines in 19 files covered. (71.72%)

308 existing lines in 24 files now uncovered.

7808 of 9497 relevant lines covered (82.22%)

0.82 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
96.3
 pvactools/tools/pvaccompare/comparisons/compare_aggregated_tsv.py
2
90.91
 pvactools/tools/pvaccompare/runners/run_compare_aggregated_tsv.py
2
83.33
 pvactools/tools/pvaccompare/runners/run_compare_json.py
2
91.67
 pvactools/tools/pvaccompare/runners/run_compare_reference_matches_tsv.py
2
90.0
 pvactools/tools/pvaccompare/runners/run_compare_unaggregated_tsv.py
4
88.57
 pvactools/tools/pvaccompare/comparisons/compare_reference_matches_tsv.py
4
75.0
 pvactools/tools/pvaccompare/runners/run_compare_yml.py
9
84.21
 pvactools/tools/pvaccompare/comparisons/compare_yml.py
9
93.88
 pvactools/tools/pvaccompare/run_utils.py
12
20.0
 pvactools/tools/pvaccompare/compare_tools/validators.py
18
25.0
 pvactools/tools/pvaccompare/server.py
27
51.79
 pvactools/tools/compare.py
74
8.64
 pvactools/tools/pvaccompare/compare_tools/comparison_router.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
92.67
 -0.29% pvactools/lib/fasta_generator.py
1
96.0
 0.17% pvactools/tools/pvacbind/generate_aggregated_report.py
1
96.3
 0.14% pvactools/tools/pvacfuse/generate_aggregated_report.py
1
96.97
 0.09% pvactools/tools/pvacseq/generate_aggregated_report.py
1
96.67
 0.11% pvactools/tools/pvacsplice/generate_aggregated_report.py
2
77.21
 -1.23% pvactools/lib/prediction_class.py
5
91.67
 0.0% pvactools/lib/post_processor.py
6
83.8
 0.0% pvactools/tools/pvacfuse/run.py
7
0.0
 0.0% pvactools/tools/pvacbind/main.py
7
81.63
 0.78% pvactools/tools/pvacfuse/main.py
7
83.33
 0.64% pvactools/tools/pvacseq/main.py
7
82.0
 0.75% pvactools/tools/pvacsplice/main.py
7
71.88
 1.88% pvactools/tools/pvacvector/main.py
8
79.59
 -8.16% pvactools/lib/run_utils.py
9
74.14
 -1.79% pvactools/lib/allele_specific_binding_filter.py
10
83.02
 -0.48% pvactools/tools/pvacbind/run.py
10
79.49
 -0.34% pvactools/tools/pvacseq/run.py
10
85.03
 -0.34% pvactools/tools/pvacsplice/run.py
11
90.15
 0.08% pvactools/lib/splice_pipeline.py
11
91.61
 0.54% pvactools/lib/top_score_filter.py
18
94.77
 2.79% pvactools/lib/aggregate_all_epitopes.py
36
87.68
 0.54% pvactools/lib/calculate_reference_proteome_similarity.py
37
85.5
 0.44% pvactools/tools/pvacvector/run.py
95
84.71
 -7.21% pvactools/lib/output_parser.py
Jobs
ID Job ID Ran Files Coverage
1 13435713044.1 143
82.22
Source Files on build 13435713044