axondeepseg / axondeepseg / 13334177990

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github

Add click to delete "axon" objects and click to view morphometrics (#868)

* Print coords when image is clicked

* Remove loose print)

* Add option to use keyboard modifiers

* First WIP of feature

* Cleanup

* Add button to toggle on/off click to remove axons

* Add logic and message to handle cases were users dont select the image or dont have the masks prior to click to remove

* Generate instance seg if none when remove axon button is clicked

* Add feature to show axon morphometrics when clicked

* Add toggle feature to button

* Fix some bugs related to button click logic

* Auto-select image layer when toggle buttons are clicked

* Print morphometrics to only 2 decimal places

* Removed morphometrics file:

* Cleanup

* Handle case where user opens image prior to loading plugin

* Fix toggle button bug

* Fix bug, rename button

* Add units to morphometrics display

* Add feature documentation

* Add tooltips

* Initial napari test attempt

* Initial napari test attempt

* Initial napari test attempt

* Typo

* Try headless

* Remove ubntu from napari tests - known qtpy issues

* Merge

* Add test_on_load_mask_button_click test

* Try adding second condition to coveralls

* Try adding second condition to coveralls

* Try adding second condition to coveralls

* Try adding second condition to coveralls

* debug

* debug

* debug

* debug

* Add missing init in test folder

* Simulate some remove axons button clicks, do it the qt way

* Test click remove axon

* Handle better world-data coords, define axon/myelin sample coords, add myelin click

* Add button click tests to show axon metrics

* Add pixel click test for show axon metrics

* Handle test case where user cancels pixel size box

* Remove files

* Assert that axon is removed if myelin is clicked and vice versa

* Add test for undo

* Add test clicking background pixel - currently fails

* Solve backgroun pixel click case

* Add test case ctrl-click remove axon but layer is selected

* ... (continued)

160 of 177 new or added lines in 2 files covered. (90.4%)

1480 of 1693 relevant lines covered (87.42%)

2.39 hits per line