13288513296
90%

Ran 12 Feb 2025 03:10PM UTC

Jobs 3

Files 47

Run time 292min

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Committed 12 Feb 2025 03:10PM UTC coverage: 43.412%. Remained the same

Build # 13288513296

Build Type

push

github

Committed by

web-flow

Commit Message

run ALL tests locally (#51)

## Context

We should be able to run locally all the tests that we run in the CI to
not overload the CI itself that has a limited amount of minutes per
month.

## Scope

#### tox command changelogs
- [x] remove `bbp-model` command: it was referring to bbp, too
encompassing, not clear what was tested
- [x] added: `test-integration-e2e, test-scientific,
test-scientific-ngv` to test the respective test sets
- [x] ~~renamed: `test-unit, test-baseline, test-integration` so that it
is clear what it is doing. It is also the same convention as in the
folder naming (all the tests are under `tests/*`)~~ EDIT: @WeinaJi was
opposed to this. This change has been reverted
- [x] added: `tests` to run all the tests except `ngv`
- [x] added: `clean` to remove all the leftovers of the tests that we
run. To be used only manually, after manually checking the test results
- [x] updated: gitignore so that we do not accidentally commit leftovers
from the tests

#### workaround and fixes
Workaround because of #3
fix: #64 (thx @WeinaJi  for this collaborative effort)

## Testing

Atm, with these changes, all the tests pass in my local system.
Remember to update your `neurodamus-models` to 2.4.2. Otherwise
neurodamus will fail with a segfault in the `scientific` tests. It is
due to the previous pr about hoc maps

Run Details

3911 of 9009 relevant lines covered (43.41%)

0.92 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
1	20.0	-1.82%	neurodamus/lfp_manager.py
2	77.78	-22.22%	neurodamus/__init__.py
3	23.57	-0.51%	neurodamus/cell_distributor.py
6	54.93	-8.45%	neurodamus/core/_mpi.py
7	71.05	-18.42%	neurodamus/core/mechanisms.py
9	52.73	-16.36%	neurodamus/core/_engine.py
13	0.0	-24.53%	neurodamus/hocify.py
15	29.27	-36.59%	neurodamus/core/random.py
17	39.43	-4.44%	neurodamus/target_manager.py
18	52.99	-15.38%	neurodamus/utils/pyutils.py
20	0.0	-17.86%	neurodamus/commands.py
33	37.31	-49.25%	neurodamus/core/_neurodamus.py
42	32.47	-54.55%	neurodamus/utils/logging.py
48	13.15	-4.24%	neurodamus/node.py
55	40.48	-32.74%	neurodamus/core/_neuron.py
92	31.65	-42.2%	neurodamus/core/cell.py
115	36.06	-42.75%	neurodamus/core/stimuli.py
116	18.52	-71.6%	neurodamus/morphio_wrapper.py
178	20.41	-72.65%	neurodamus/io/sonata_config.py
251	29.8	-32.1%	neurodamus/core/configuration.py

Subprojects

ID	Flag name	Job ID	Ran	Files	Coverage
1	baseline	13288513296.1	12 Feb 2025 03:10PM UTC	47	24.43	GitHub Action Run
2	unit	13288513296.2	12 Feb 2025 03:11PM UTC	47	31.86	GitHub Action Run
3	integration	13288513296.3	12 Feb 2025 03:11PM UTC	47	35.94	GitHub Action Run

openbraininstitute / neurodamus / 13288513296
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openbraininstitute / neurodamus / 13288513296 90%

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openbraininstitute / neurodamus / 13288513296
90%

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