13177596389
59%

Ran 06 Feb 2025 11:18AM UTC

Jobs 1

Files 224

Run time 1min

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Committed 06 Feb 2025 11:16AM UTC coverage: 59.668% (-0.5%) from 60.211%

Build # 13177596389

Build Type

push

github

Committed by

web-flow

Commit Message

Add SMRT Link API client and EPP for fetching run information (#586)(major)

### Added
- Added a client for working with the SMRT Link API
- Added a new EPP for fetching run information from SMRT Link
- Added support for the updated LIMS config

### Changed
- Refactored the location of modules used for setting up the API connection to StatusDB (cg)

Run Details

111 of 255 new or added lines in 10 files covered. (43.53%)

28 existing lines in 3 files now uncovered.

5067 of 8492 relevant lines covered (59.67%)

0.6 hits per line

New Missed Lines in Diff

Lines	Coverage	File
1	91.67	cg_lims/clients/smrt_link/models.py
36	33.33	cg_lims/EPPs/udf/set/smrt_link_run_information.py
107	38.15	cg_lims/clients/smrt_link/smrt_link_client.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	96.0	0.35%	cg_lims/EPPs/udf/set/base.py
4	72.09	0.0%	cg_lims/EPPs/udf/set/set_samples_reads_missing.py
23	25.81	-0.59%	cg_lims/scripts/one_time_scripts/topup_summary.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	13177596389.1	06 Feb 2025 11:18AM UTC	224	59.67	GitHub Action Run

Clinical-Genomics / cg_lims / 13177596389
59%

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Clinical-Genomics / cg_lims / 13177596389 59%

README BADGES x

Markdown

Textile

RDoc

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Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 13177596389

Clinical-Genomics / cg_lims / 13177596389
59%

README BADGES
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