Ran
|
Jobs
3
|
Files
42
|
Run time
11min
|
Badge
Embed ▾
README BADGES
|
push
travis-ci
906 of 906 new or added lines in 29 files covered. (100.0%)
5168 of 7855 relevant lines covered (65.79%)
1.97 hits per line
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
31.82 |
0.0% | tools/megan.py |
2 |
71.73 |
-0.11% | interhost.py |
2 |
73.06 |
-0.07% | tools/mummer.py |
2 |
84.62 |
-8.24% | tools/trimmomatic.py |
3 |
80.28 |
-7.37% | assembly.py |
3 |
83.2 |
-1.23% | tools/novoalign.py |
4 |
92.31 |
tools/bwa.py | |
5 |
92.41 |
22.91% | tools/kraken.py |
5 |
47.76 |
-5.67% | util/cmd.py |
8 |
76.61 |
0.85% | tools/picard.py |
8 |
84.87 |
-1.01% | tools/samtools.py |
9 |
89.21 |
0.39% | taxon_filter.py |
9 |
52.54 |
-34.0% | tools/gatk.py |
10 |
80.39 |
-19.61% | tools/prinseq.py |
11 |
78.27 |
1.9% | read_utils.py |
14 |
60.87 |
2.35% | util/file.py |
15 |
77.29 |
14.24% | util/misc.py |
23 |
81.87 |
-7.99% | metagenomics.py |
47 |
71.36 |
-6.05% | illumina.py |
57 |
54.5 |
-3.15% | tools/__init__.py |
Lines | Coverage | ∆ | File |
---|---|---|---|
2 |
89.21 |
0.39% | taxon_filter.py |
6 |
47.76 |
-5.67% | util/cmd.py |
6 |
76.61 |
0.85% | tools/picard.py |
10 |
68.58 |
-1.37% | intrahost.py |
10 |
81.87 |
-7.99% | metagenomics.py |
10 |
78.27 |
1.9% | read_utils.py |
14 |
52.54 |
-34.0% | tools/gatk.py |
54 |
80.28 |
-7.37% | assembly.py |
57 |
13.16 |
-50.0% | util/stats.py |
ID | Job ID | Ran | Files | Coverage | |
---|---|---|---|---|---|
1 | 2708.1 | 42 |
65.73 |
Travis Job 2708.1 | |
2 | 2708.2 | 42 |
65.63 |
Travis Job 2708.2 | |
3 | 2708.3 | 42 |
65.2 |
Travis Job 2708.3 |
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|