12925680024
86%

Ran 23 Jan 2025 09:04AM UTC

Jobs 1

Files 813

Run time 1min

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Committed 23 Jan 2025 09:01AM UTC coverage: 85.491% (+1.0%) from 84.535%

Build # 12925680024

Build Type

push

github

Committed by

web-flow

Commit Message

Feat(Orders) Introduce comprehensive order validation (#3815)(major)

### Added

- New validation flow for all order types
- New OrderValidationService
- New BaseModel's for all order types performing basic validation such as type checking
- Rules written for each validation for more complicated rules, including database checks and fields dependent on each other.
- New endpoint for validating orders
- New Request handling in submit_order

Run Details

3070 of 3158 new or added lines in 127 files covered. (97.21%)

31 existing lines in 3 files now uncovered.

25831 of 30215 relevant lines covered (85.49%)

0.85 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	97.96		cg/services/orders/validation/models/case.py
1	85.71		cg/services/orders/validation/models/order_with_samples.py
1	99.59		cg/services/orders/validation/rules/case_sample/rules.py
1	99.21		cg/services/orders/validation/rules/sample/utils.py
1	97.56		cg/services/orders/validation/rules/utils.py
2	83.02	-0.31%	cg/services/orders/order_service/order_service.py
2	91.67		cg/services/orders/validation/errors/validation_errors.py
2	98.73		cg/services/orders/validation/rules/sample/rules.py
2	92.0		cg/services/orders/validation/workflows/fluffy/models/order.py
2	93.33		cg/services/orders/validation/workflows/fluffy/models/sample.py
2	93.33		cg/services/orders/validation/workflows/rml/models/sample.py
3	86.36		cg/services/orders/storing/service.py
3	88.46		cg/services/orders/validation/rules/case/utils.py
5	47.06	0.44%	cg/server/endpoints/orders.py
5	84.17		cg/services/orders/submitter/ticket_handler.py
5	92.54		cg/services/orders/validation/response_mapper.py
5	86.84		cg/services/orders/validation/rules/case_sample/pedigree/utils.py
5	73.68		cg/services/orders/validation/workflows/balsamic_umi/models/order.py
6	80.0		cg/services/orders/lims_service/service.py
9	90.82		cg/services/orders/validation/model_validator/utils.py
10	89.69		cg/services/orders/storing/implementations/case_order_service.py
15	91.02		cg/services/orders/validation/rules/case_sample/utils.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	83.02	-0.31%	cg/services/orders/order_service/order_service.py
3	83.78	0.45%	cg/apps/hermes/hermes_api.py
27	93.03	0.02%	cg/models/cg_config.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	12925680024.1	23 Jan 2025 09:04AM UTC	813	85.49	GitHub Action Run

Clinical-Genomics / cg / 12925680024
86%

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Clinical-Genomics / cg / 12925680024 86%

README BADGES x

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New Missed Lines in Diff

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Source Files on build 12925680024

Clinical-Genomics / cg / 12925680024
86%

README BADGES
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