shimming-toolbox / shimming-toolbox / 12895932037

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Use the table position information to generate spherical harmonic coil profiles with proper origin (#539)

* Add function to extract isocenter location in RAS coordinates

* Use isocenter location to create coil profiles with the right origin

* Adjust limit for the phase when calculating phase maps

* Add magnitude field since required in the update of dcm2niix

* Fix typo

* Update to newest dcm2niix version

* Add dcm2niix from pypi

* Add to dcm2bids

* Add tests and small fix ups

* Fix debug output of the coils when the fmap needed to be extended due to too few slices

* Update config file according to newer version of dcm2niix

* Small changes according to code review

* Missed a comma

35 of 100 new or added lines in 5 files covered. (35.0%)

5309 of 5872 relevant lines covered (90.41%)

5.42 hits per line