12417703991
98%
main: 94%

Ran 19 Dec 2024 05:31PM UTC

Jobs 1

Files 8

Run time 1min

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Committed 19 Dec 2024 05:26PM UTC coverage: 98.379% (-0.08%) from 98.454%

Build # 12417703991

Build Type

push

github

Committed by

web-flow

Commit Message

tRNA counts frq (#171)

In this PR, I:
- Create tRNA_counts method in GeneSet class (and associated pytest)
- Create tRNA_frequency method in GeneSet class (and associated pytest)
- Add newly relevant codon and amino acid dictionaries/lists for tRNA
work
- Create small reverse complement function for working with tRNA
anticodons and complementary codons

Plans, (but not high priority right now):
- Option/method to input tRNA expression values (like FPKM) from a file
instead of current copy number method
- Option/method to account for other non-BAKTA formatted tRNA gene
header regex patterns

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Eric Bastien <gbastien@umich.edu>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Run Details

607 of 617 relevant lines covered (98.38%)

1.97 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	12417703991.1	19 Dec 2024 05:31PM UTC	0	98.38	GitHub Action Run

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DuhaimeLab / VirusHostInteractionPredictor / 12417703991
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