griffithlab / pVACtools / 12414977941
83%
master: 83%

LAST BUILD BRANCH: pvacvector
DEFAULT BRANCH: master
Ran
Jobs 5
Files 119
Run time 1min
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coverage: 83.233% (+0.5%) from 82.75%
12414977941

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Merge pull request #1167 from griffithlab/aggregate_inclusion_count_limit_bugfix

Fix bug with pVACsplice aggregate_inclusion_count_limit

7357 of 8839 relevant lines covered (83.23%)

4.15 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
95.83
 0.18% pvactools/tools/pvacbind/generate_aggregated_report.py
1
90.0
 0.0% pvactools/tools/pvacseq/top_score_filter.py
1
96.88
 10.76% pvactools/tools/pvacseq/generate_aggregated_report.py
1
96.15
 0.15% pvactools/tools/pvacfuse/generate_aggregated_report.py
2
82.69
 -0.33% pvactools/tools/pvacseq/main.py
2
80.85
 -0.4% pvactools/tools/pvacfuse/main.py
2
93.75
 -6.25% pvactools/lib/sort.py
5
92.18
 0.56% pvactools/lib/post_processor.py
7
55.17
 -2.52% pvactools/tools/main.py
9
74.29
 -0.24% pvactools/tools/pvacfuse/generate_protein_fasta.py
12
87.76
 1.19% pvactools/lib/run_utils.py
13
83.5
 0.16% pvactools/tools/pvacbind/run.py
14
83.23
 0.1% pvactools/lib/netmhc_stab.py
16
89.36
 -3.39% pvactools/lib/fasta_generator.py
18
79.82
 0.18% pvactools/tools/pvacseq/run.py
19
88.76
 2.96% pvactools/lib/net_chop.py
20
83.8
 0.09% pvactools/tools/pvacfuse/run.py
20
70.83
 0.0% pvactools/tools/pvacseq/generate_protein_fasta.py
23
91.07
 -1.88% pvactools/lib/top_score_filter.py
27
0.0
 0.0% pvactools/tools/pvacbind/main.py
40
87.14
 2.34% pvactools/lib/calculate_reference_proteome_similarity.py
40
83.81
 4.25% pvactools/tools/pvacvector/run.py
45
91.92
 -0.0% pvactools/lib/output_parser.py
46
87.32
 -0.2% pvactools/lib/pipeline.py
61
78.44
 -0.16% pvactools/lib/prediction_class.py
61
92.27
 -0.15% pvactools/lib/aggregate_all_epitopes.py
64
85.71
 -1.35% pvactools/lib/input_file_converter.py
Jobs
ID Job ID Ran Files Coverage
1 12414977941.1 119
83.16
 GitHub Action Run
2 12414977941.2 119
83.21
 GitHub Action Run
3 12414977941.3 119
83.0
4 12414977941.4 119
83.21
 GitHub Action Run
5 12414977941.5 119
83.16
 GitHub Action Run
Source Files on build 12414977941