TuringLang / Turing.jl / 12411385284

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github

Committed by web-flow

Commit Message

Replace old Gibbs sampler with the experimental one. (#2328)

* Replace old Gibbs sampler with the experimental one.

* Remove dead references to experimental

* Remove mention of experimental from JuliaFormatter conf

* Add tests for deprecated constructor

* Fix deprecated Gibbs constructors. Add HISTORY entry.

* Bump version to 0.35.0

* Add Gibbs constructor test for repeat samplers

* Fix typo in test/mcmc/ess.jl

* Use provided rng to initialise VarInfo in Gibbs

* Fix a typo in GibbsContext

* Fix the Gibbs sampler

* Fix the Gibbs sampler more

* Remove mentions of old Gibbs sampler from MH docs

Co-authored-by: Penelope Yong <penelopeysm@gmail.com>

* Bump DPPL to 0.28.6

* Redesign GibbsContext, work in progress

* Fixing new Gibbs, adding a broken test

* Document and clean up GibbsContext

* Code style and docs improvements to Gibbs

* Change how AdvancedHMC Gibbs state treats momenta

* Remove unnecessary invlinking

* Change how AdvancedHMC Gibbs state treats momenta, again

* Use setparams!! rather than reset_state!!

* Don't overload setparams\!\! with VarInfo

* A fix for ESS in Gibbs

* Remove recompute_logprob!!

* Fix setparams_varinfo!! for MH

* Stop hard coding the leafcontext for MH setparams_varinfo!!

* Fix setparams_varinfo!! for ESS

* Fix the context used by setparams_varinfo!! ESS

* Add GibbsContext type stability tests

* Apply suggestions from code review

Co-authored-by: Tor Erlend Fjelde <tor.erlend95@gmail.com>

* Add clarifying comment

* Add setparams_varinfo!! type bounds

* Fix an import

* Style improvement

* Improve GibbsContext type stability test

* Add comment to constructor tests

* Fix a Gibbs test

* Document the methods of `varinfo` better

* Check whether a sampler is a valid Gibbs component

* Move varinfo methods where they belong

* Fix calling of child context in GibbsContext

* Fix Selectors and type stabilit... (continued)

Run Details

223 of 255 new or added lines in 11 files covered. (87.45%)

13 existing lines in 3 files now uncovered.

1356 of 1588 relevant lines covered (85.39%)

6650345.35 hits per line