griffithlab / pVACtools / 12317062666
84%
master: 84%

LAST BUILD BRANCH: ml_predictor3
DEFAULT BRANCH: master
Ran
Jobs 4
Files 119
Run time 1min
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coverage: 83.144% (+0.1%) from 83.008%
12317062666

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Merge pull request #911 from mrichters/staging

Add new pVACsplice tool

1373 of 1624 new or added lines in 49 files covered. (84.54%)

1 existing line in 1 file now uncovered.

7394 of 8893 relevant lines covered (83.14%)

3.32 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.92
 pvactools/lib/filter_regtools_results.py
1
96.0
 pvactools/lib/load_gtf_data.py
1
90.0
 pvactools/tools/pvacsplice/allele_specific_cutoffs.py
1
90.0
 pvactools/tools/pvacsplice/binding_filter.py
1
97.14
 pvactools/tools/pvacsplice/coverage_filter.py
1
97.22
 pvactools/tools/pvacsplice/download_example_data.py
1
96.55
 pvactools/tools/pvacsplice/generate_aggregated_report.py
1
91.67
 pvactools/tools/pvacsplice/identify_problematic_amino_acids.py
1
90.0
 pvactools/tools/pvacsplice/top_score_filter.py
1
93.75
 pvactools/tools/pvacsplice/transcript_support_level_filter.py
1
90.0
 pvactools/tools/pvacsplice/valid_alleles.py
2
87.14
 0.05% pvactools/lib/calculate_reference_proteome_similarity.py
2
95.12
 pvactools/lib/combine_inputs.py
2
93.75
 -6.25% pvactools/lib/sort.py
3
96.43
 pvactools/lib/fasta_to_kmers.py
3
87.24
 -0.28% pvactools/lib/pipeline.py
3
55.17
 -2.52% pvactools/tools/main.py
4
85.19
 pvactools/lib/print_log.py
5
50.0
 pvactools/tools/pvacsplice/calculate_reference_proteome_similarity.py
5
50.0
 pvactools/tools/pvacsplice/net_chop.py
5
50.0
 pvactools/tools/pvacsplice/netmhc_stab.py
6
91.92
 -0.0% pvactools/lib/output_parser.py
6
89.29
 pvactools/lib/prediction_class_utils.py
6
79.56
 0.0% pvactools/tools/pvacvector/run.py
9
91.07
 -1.88% pvactools/lib/top_score_filter.py
9
81.25
 pvactools/tools/pvacsplice/main.py
13
90.08
 pvactools/lib/splice_pipeline.py
14
92.27
 -0.76% pvactools/lib/aggregate_all_epitopes.py
20
85.71
 -1.35% pvactools/lib/input_file_converter.py
24
81.82
 pvactools/lib/junction_to_fasta.py
24
85.37
 pvactools/tools/pvacsplice/run.py
75
21.88
 pvactools/tools/pvacsplice/generate_protein_fasta.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.76
 2.96% pvactools/lib/net_chop.py
Jobs
ID Job ID Ran Files Coverage
1 12317062666.1 119
83.14
 GitHub Action Run
2 12317062666.2 119
83.1
 GitHub Action Run
3 12317062666.3 119
83.1
 GitHub Action Run
4 12317062666.4 119
83.14
 GitHub Action Run
Source Files on build 12317062666