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NBISweden / AGAT / 12195068409
57%

Build:
DEFAULT BRANCH: master
Ran 06 Dec 2024 08:16AM UTC
Jobs 1
Files 76
Run time 1min
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06 Dec 2024 07:54AM UTC coverage: 81.048% (-0.003%) from 81.051%
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fix #457 remove attribute in gene_id and transcript_id to keep only the first … (#496)

* remove multi values in special attributes gene_id and transcript_id to keep only the first one. The others are saved in agat_other_gene_id or agat_other_ transcript_id

* when using merge_overlap_loci avoid to merge value for ID Parent and no gene_id too. Avoid to add ID created on the fly when creating merged_.

* add a deflate_attribute parameter. Make also a global variable for CONFIG to be available from everywhere (filled by get_agat_config)

* Update and add tests

91 of 119 new or added lines in 5 files covered. (76.47%)

1 existing line in 1 file now uncovered.

12415 of 15318 relevant lines covered (81.05%)

2118.71 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
52.73
-0.36% lib/AGAT/Config.pm
25
81.0
-2.26% lib/AGAT/OmniscientToGTF.pm

Uncovered Existing Lines

Lines Coverage ∆ File
1
81.0
-2.26% lib/AGAT/OmniscientToGTF.pm
Jobs
ID Job ID Ran Files Coverage
1 12195068409.1 06 Dec 2024 08:16AM UTC 76
81.05
GitHub Action Run
Source Files on build 12195068409
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  • Changed 20
  • Source Changed 0
  • Coverage Changed 7
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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