angelolab / toffy / 12170042654

92%

Build Type

push

github

Committed by web-flow

Commit Message

Enforce `exact_match=True` when listing JSON file for `get_estimated_time` for MPH (#467)

* Enforce exact_match=True for get_estimated_time

* Ensure we're not searching for the actual extension

* Modify list_files to use "correct" syntax for exact_match=True and filter out non-.json

* Make workflow of getting bin file easier

* Remove the == 0

* Add processing.json files to test

* Fix bin file generation by simulating update only after .json file written (not immediately after .bin file written)

* Formatting to avoid going over 100 characters per line

* Add trailing comma to please black linter

* Print statement debugging

* See if an OSError is being thrown

* More debugging statements: need to see the MPH process

* Test the presence and contents of log_out

* See what the actual log path is being set to

* Try adding a simple logging statement at the beginning to force

* Try to set logging propagation to be False

* Fix pyproject.toml logging

* Additional changes to pytest pyproject.toml

* Lowercase true for pyproject.toml

* Attempt to force pytest fixture to write to log file

* Add logging import

* Remove whitespace

* Try to fix logging issue

* Overwrite pytest.txt with blank stuff

* More testing fixes

* Use the absolute path to the directory for accessing hte log

* Adjust error message

* Don't print add_blank

* Check if the error is happening during the renaming phases

* Add some more tests in

* Actually get image_stitching to print out debug

* Pin watchdog to version 6

* Update lock file

* Add debug workflow to GitHub PR

* Remove the lock entirely

* Nuke file timer functionality

* Test deleting the lock AND the timer

* Try pushing old slow copy tissue data

* removed debug

* See if sleeping for 2 seconds will prevent the toffy segmentation error from popping up

* black formatting

* Massive test overhaul: see how many tests pass now... (continued)

Run Details

1422 of 1549 branches covered (91.8%)

Branch coverage included in aggregate %.

8 of 8 new or added lines in 4 files covered. (100.0%)

6 existing lines in 1 file now uncovered.

2715 of 2949 relevant lines covered (92.07%)

0.92 hits per line