FAIRmat-NFDI / pynxtools-em / 12130203779

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Bring in NOMAD examples (#79)

* Implementing fixes for EM and APM examples in NOMAD

* Pluginise pynxtools

* prepare bringing in NOMAD examples

* typo fix

* typo fix in nomad entrypoint test

* linting of entrypoints

* bring in additional changes from SprintNomadBaseSectionEmApmFixes branch

* return archive dict in testing function

* fix pyproject

* use relative path for test

* bump ruff to >v0.6

* fix ruff error

* update pre-commit and dev-requirements

* update dev-requirements

* use resource in ExampleUploadEntryPoint

* linting

* update ruff

* ruff 0.8 formatting

* update nomad exmaple tests

* move some test functionality to pynxtools

* update MANIFEST

* simplify nomad import test in test_nomad_examples

* CI: install nomad with infrastructure extra and test also with python 3.12

* fix typo in CI/CD

* update pynxtools dependency

* update pynxtools in dev-requirements

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Co-authored-by: Markus Kuehbach <kuehbach@fhi-berlin.mpg.de>
Co-authored-by: Florian Dobener <florian.dobener@physik.hu-berlin.de>
Co-authored-by: mkuehbach <markus.kuehbach@physik.hu-berlin.de>

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