Clinical-Genomics / cg / 12049749311

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Set parameters in params file, and not config (#3965) | major

- Rename workflow_path to workflow_bin_path to make clearer that we are talking about the codebase of the workflow
- Renamed config_resources into resources, config_platform into platform
- Split config_params into params and config
- Building parameters with config_case now has a part with cg-built(or fetched) parameters that is added to the parameter file from servers. Placeholders are used and replaced by the value extracted from the same parameter dictionary, to avoid typos/repeats
- Use target_bed_file instead of target_bed because target_bed needs the path to the reference directory that is defined in servers -> target_bed_file is the filename and target_bed in params uses that with the reference path to build the full file path
- Removed unused is_params_appended_to_nextflow_config function
- Add references are specified in params files from servers and don't need to be read-in and handled by cg

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