iqtree / piqtree2 / 11885184259

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github

DEV: Add Type Checking With mypy (#95)

* DEV: add mypy

* DEV: fix type hinting in `_substitution_model`

* MAINT: fix type hinting in `_freq_type`

* MAINT: fix type errors in `_options.py`

* MAINT: fix type hinting in `_model.py`

* MAINT: fix typing in `test_build_tree.py`

* MAINT: help mypy in `test_segmentation_fault.py`

* MAINT: fix type hinting in `test_options.py`

* MAINT: remove unused import

* MAINT: and typing ignores for purposefully bad types in `test_rate_type`

* DEV: add type checking github action

* DEV: ensure libiqtree is present of type checking

* DEV: wait for iqtree to be fetched before type checking

* DEV: Only fet IQ-TREE on ubuntu for type checking

* DEV: move type checking job into ci workflow

12 of 12 new or added lines in 6 files covered. (100.0%)

910 of 922 relevant lines covered (98.7%)

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