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Update dependencies (`pandas`, `numpy`, `onnx`) (#1318)

* `requirements.txt`: Unpin `pandas<2.0`

* Replace all instances of `df.append` with `[].append`
Source: https://stackoverflow.com/a/75956237

It's very inefficient to repeatedly append/concat to a df. So, what I try to do instead is create a list of items, then call pd.DataFrame.

* `requirements.txt`: Limit `onnx<1.16.2` to dodge Windows bug

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