Ouranosinc / xscen / 10909214964

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Cookiecutter update (#452)

### What kind of change does this PR introduce?

* Updates the cookiecutter template to the latest commit
* CI now uses a `CI` folder to manage pip dependencies
* checks for `YAML` format and code quality are stricter (via `ruff`)
* Python3.13 has been added to the list of supported Python versions
* Development dependency and documentation updates
* `flake8-alphabetize` has been replaced by `ruff` 
* `numpydoc-validate` has been staged for integration in linting
* There is now a license statement in the top-level `__init__.py`

### Does this PR introduce a breaking change?

Not really. The linting checks are more intense.

### Other information:

`numpydoc-validate` is not enabled since the changes are significant and
require input from multiple developers. These should come about in
another PR.

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