3610
43%

Ran 12 Jul 2016 08:50PM UTC

Jobs 3

Files 290

Run time 12min

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Build # 3610

Build Type

push

travis-ci

Committed by

nathandunn

Commit Message

Ability to use parent information from JSON (do not merge) (#1171)

* Comment should be lower case since it is a non-reserved GFF3 property

* Add support for using gene information and metadata, when provided in JSON to addFeature and addTranscript

* Fix bug with parsing a FeatureProperty in convertJSONToFeature

* bundle the parent information properly to transcript JSON in addFeature

* Add integration tests

* add 'parent' attribute to FeatureStringEnum

* improve bulk loading script to properly handle coding annotations

* parse symbol, description and feature properties properly

* move addNonPrimaryDbxrefs and addNonReservedProperties to FeatureService

* Add support for handling gene metadata when adding an incoming transcript to an overlapping isoform's gene

* Fix JSON in tests

* add testCredentials to JSON in integration tests

* Clean up addFeature method

* Fix bug in Gff3HandlerService w.r.t. comment export

* handle 'status' attributes properly at the time of import

* Remove usage of reserved_properties in favor of explicit handling of properties

* Update documentation for Data Loading

* Fix bug with transcript naming inconsistency in addTranscript

* Add a test mode to add_transcripts_from_gff3_to_annotations.pl

* Add an integration test to try GFF3 export and import

Run Details

5083 of 10067 relevant lines covered (50.49%)

3662.49 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	3610.1 (DB=postgres)	12 Jul 2016 09:02PM UTC	290	50.45	Travis Job 3610.1
2	3610.2 (DB=mysql)	12 Jul 2016 08:50PM UTC	290	47.53	Travis Job 3610.2
3	3610.3 (DB=h2)	12 Jul 2016 09:01PM UTC	290	47.55	Travis Job 3610.3

Source Files on build 3610

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

GMOD / Apollo / 3610
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GMOD / Apollo / 3610
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