Clinical-Genomics / cg / 10597037807

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github

Add mutant qc (#3300) (minor)

### Added

- Added  property `is_negative_control` to `Sample` model.

- Defined a mutant specific `store-available` function that calls `run_qc_and_fail_analyses()`
- `run_qc_and_fail_analyses()` performs qc on a case, generates a qc_report file, adds qc summary to the comment on the analyses on trailblazer and sets analyses that fail QC as failed on Trailblazer.
- CLI `run-qc` command to manually run QC on case and generate qc_report file. 


### Changed

- `MockLimsApi` to have more functionalities for testing.

289 of 377 new or added lines in 14 files covered. (76.66%)

10093 of 12322 relevant lines covered (81.91%)

1.79 hits per line