10138424915
73%

Ran 29 Jul 2024 05:07AM UTC

Jobs 9

Files 108

Run time 4min

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Committed 29 Jul 2024 04:30AM UTC coverage: 77.458% (+0.4%) from 77.039%

Build # 10138424915

Build Type

push

github

Committed by

GavinHuttley

Commit Message

ENH: mods to EnsemblGffRecord

[NEW] .spans_array() returns the spans attribute as a 32-bit
    numpy array

[CHANGED] .update_record() (from update_from_attrs()) now updates
    start / stop values, also added a flag attribute to only do this
    once

[NEW] added _array_int32 function for converting span data to numpy array

[NEW] .to_record() method is responsible for preparing a record
    for addition into a database. Has optional control over whether
    to convert the spans numpy array to a BLOB for db storage. Note
    that this not used for sqlite3 since cogent3 defines a custom array
    field that handles that.

Run Details

12308 of 15890 relevant lines covered (77.46%)

1.14 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
3	96.52	-0.25%	.nox/test-3-10/Lib/site-packages/ensembl_lite/_storage_mixin.py
3	96.52	-0.25%	.nox/test-3-11/Lib/site-packages/ensembl_lite/_storage_mixin.py
3	96.52	-0.25%	.nox/test-3-11/lib/python3.11/site-packages/ensembl_lite/_storage_mixin.py
3	96.52	-0.25%	.nox/test-3-10/lib/python3.10/site-packages/ensembl_lite/_storage_mixin.py
3	96.52	-0.25%	.nox/test-3-12/lib/python3.12/site-packages/ensembl_lite/_storage_mixin.py
3	96.52	-0.25%	.nox/test-3-12/Lib/site-packages/ensembl_lite/_storage_mixin.py
48	90.55	0.44%	.nox/test-3-11/lib/python3.11/site-packages/ensembl_lite/_genome.py
48	90.55	0.44%	.nox/test-3-11/Lib/site-packages/ensembl_lite/_genome.py
48	90.55	0.44%	.nox/test-3-10/Lib/site-packages/ensembl_lite/_genome.py
48	90.55	0.44%	.nox/test-3-10/lib/python3.10/site-packages/ensembl_lite/_genome.py
48	90.55	0.44%	.nox/test-3-12/lib/python3.12/site-packages/ensembl_lite/_genome.py
48	90.55	0.44%	.nox/test-3-12/Lib/site-packages/ensembl_lite/_genome.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	run-3.12-ubuntu-latest - 10138424915.1	29 Jul 2024 05:07AM UTC	18	72.47	GitHub Action Run
2	run-3.10-ubuntu-latest - 10138424915.2	29 Jul 2024 05:07AM UTC	18	72.48	GitHub Action Run
3	run-3.11-ubuntu-latest - 10138424915.3	29 Jul 2024 05:07AM UTC	18	72.47	GitHub Action Run
4	run-3.11-windows-latest - 10138424915.4	29 Jul 2024 05:08AM UTC	18	77.45	GitHub Action Run
5	run-3.11-macos-latest - 10138424915.5	29 Jul 2024 05:08AM UTC	18	77.45	GitHub Action Run
6	run-3.10-windows-latest - 10138424915.6	29 Jul 2024 05:08AM UTC	18	77.46	GitHub Action Run
7	run-3.10-macos-latest - 10138424915.7	29 Jul 2024 05:08AM UTC	18	77.46	GitHub Action Run
8	run-3.12-windows-latest - 10138424915.8	29 Jul 2024 05:08AM UTC	18	77.45	GitHub Action Run
9	run-3.12-macos-latest - 10138424915.9	29 Jul 2024 05:08AM UTC	18	77.45	GitHub Action Run

GavinHuttley / EnsemblLite / 10138424915
73%

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GavinHuttley / EnsemblLite / 10138424915 73%

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Markdown

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RDoc

HTML

Rst

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Source Files on build 10138424915

GavinHuttley / EnsemblLite / 10138424915
73%

README BADGES
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