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Clinical-Genomics / cg / 9836516747
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DEFAULT BRANCH: master
Ran 08 Jul 2024 08:54AM UTC
Jobs 1
Files 572
Run time 1min
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08 Jul 2024 08:53AM UTC coverage: 84.537% (+0.02%) from 84.515%
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Add HiFi metric parser for PacBio (#3308)

## Description
Closes https://github.com/Clinical-Genomics/add-new-tech/issues/44. Adds support for parsing HiFi metrics from a PacBio SMRTcell.

### Added

- Constants for file names and keywords in JSON metrics file to be parsed
- Class `MetricsParser` which parses HiFi metrics but also expandable to any other PacBio metrics
- Pydantic model `HiFiMetrics`
- Fixtures and tests

53 of 53 new or added lines in 3 files covered. (100.0%)

16614 of 19653 relevant lines covered (84.54%)

1.05 hits per line

Jobs
ID Job ID Ran Files Coverage
1 9836516747.1 08 Jul 2024 08:54AM UTC 0
84.55
Source Files on build 9836516747
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