Clinical-Genomics / cg / 9836516747

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github

Add HiFi metric parser for PacBio (#3308)

## Description
Closes https://github.com/Clinical-Genomics/add-new-tech/issues/44. Adds support for parsing HiFi metrics from a PacBio SMRTcell.

### Added

- Constants for file names and keywords in JSON metrics file to be parsed
- Class `MetricsParser` which parses HiFi metrics but also expandable to any other PacBio metrics
- Pydantic model `HiFiMetrics`
- Fixtures and tests

53 of 53 new or added lines in 3 files covered. (100.0%)

16614 of 19653 relevant lines covered (84.54%)

1.05 hits per line