9781214627
88%

Ran 03 Jul 2024 04:10PM UTC

Jobs 3

Files 31

Run time 1min

Badge

Committed 03 Jul 2024 04:04PM UTC coverage: 88.215% (-6.5%) from 94.753%

Build Type

push

github

Committed by

Commit Message

Merge pull request #253 from openvax/default-ucsc-contig-rename-true

Defaulting convert_ucsc_contig_names to True for consistency with past behavior

Run Details

1 of 1 new or added line in 1 file covered. (100.0%)

144 existing lines in 17 files now uncovered.

1542 of 1748 relevant lines covered (88.22%)

2.64 hits per line

Lines	Coverage	∆	File
1	98.89	0.85%	varcode/vcf_output.py
1	97.44	-2.56%	varcode/util.py
1	88.46	-1.19%	varcode/effects/translate.py
2	91.3	-3.14%	varcode/effects/effect_prediction_coding.py
2	95.79	0.04%	varcode/reference.py
3	58.33	-23.48%	varcode/effects/transcript_helpers.py
5	94.57	-5.43%	varcode/variant_collection.py
5	83.33	-16.67%	varcode/nucleotides.py
5	87.96	-6.48%	varcode/effects/effect_ordering.py
5	75.0	-16.89%	varcode/cli/variant_args.py
6	75.86	-5.39%	varcode/effects/effect_helpers.py
9	66.67	-12.94%	varcode/maf.py
10	92.91	-1.97%	varcode/effects/effect_classes.py
11	93.41	-6.59%	varcode/variant.py
15	82.31	-8.38%	varcode/effects/effect_prediction.py
23	70.59	-26.63%	varcode/effects/effect_collection.py
40	74.36	-25.64%	varcode/vcf.py

ID	Job ID	Ran	Files	Coverage
1	9781214627.1	03 Jul 2024 04:10PM UTC	31	88.16	GitHub Action Run
2	9781214627.2	03 Jul 2024 04:10PM UTC	31	88.22	GitHub Action Run
3	9781214627.3	03 Jul 2024 04:10PM UTC	31	88.15	GitHub Action Run