XENONnT / fuse / 9694094094

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Add lineage clustering algorithm (#190)

* Change detector physics config defaults

* Change microphysics config defaults

* Change PMT and DAQ config defaults

* Add new context functions

* cleanup

* Bump version: 0.1.1 → 0.2.0

* Update PMT Gain handling

* Update documentation

* Include some code from cutax

* Calculate S1 LCE map from patternmap

* Add _mc to s2_secondary_sc_gain config arg

* Set some default values

* Update context in tests

* Update example notebooks with new context

* bugfix in ElectronDrift

* Add S2 pattern map AFT scaling

* Update Documentation

* Cleanup

* Cleanup

* Bump version: 0.2.0 → 0.3.0

* Revert "Bump version: 0.2.0 → 0.3.0"

This reverts commit ea0df7c23.

* Bump version: 0.2.0 → 0.2.1

* cache config args for better performance

* Use new strax.DownChunkingPlugin

* Always save results of fast S1 & S2 plugins

* Change default logging level to INFO

* Increase propagated_s2_photons_file_size_target

* Bump version: 0.2.1 → 0.2.2

* get n_electron from binomial process

* Update documentation

* Bump version: 0.2.2 → 0.2.3

* BugFix

* return correct shaped zero array if empty input

* BugFix

* Use np.around in waveform dtype conversion

* Bump version: 0.2.3 → 0.2.4

* Remove interact. time offset + increase delay cut

* Bump version: 0.2.4 → 0.2.5

* Sort PMT AP photons by time

* Change PMTAfterPulses version number

* Remove unused WFSim functions

* Rename __uniform_pe.. to spe_scaling_fact..

* Refactor pmt_transit_time_spread

* Update plugin versions

* Bugfixing

* Keep only photons with positive photon_gain

* update TPC volume plugins -> Remove primary positions

* Remove cuts when reading the root file

* Remove primary positions from merge clusters

* Add lineage clustering code draft

* Add periodictable to dependencies

* Add option to choose the clustering ... (continued)

285 of 318 new or added lines in 9 files covered. (89.62%)

2605 of 3234 relevant lines covered (80.55%)

1.61 hits per line