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Core: Run before and after hooks with module context

The before and after hooks run once per module as long as there is at least one
test in the module. Using environment inheritance allows us to use the module
context in those hooks, which allows reading the expected changes to the
context from a before hook inside nested modules.

Once before hooks have run, create a flattened deep copy of the module
testEnvironment and assign that to test testEnvironment. At this point nothing
should use test.testEnvironment until the before hooks have run.

Fixes https://github.com/qunitjs/qunit/issues/1328.
Ref https://github.com/qunitjs/qunit/issues/869.
Closes https://github.com/qunitjs/qunit/pull/1762.

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