griffithlab / pVACtools / 9305493487
83%
master: 83%

LAST BUILD BRANCH: pvacview_bugfix
DEFAULT BRANCH: master
Ran
Jobs 5
Files 114
Run time 1min
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coverage: 83.187% (+0.2%) from 83.028%
9305493487

Pull #911

github

web-flow 
Merge 7e6416031 into c993b4cb2
Pull Request #911: Add new pVACsplice tool

1370 of 1621 new or added lines in 49 files covered. (84.52%)

4 existing lines in 4 files now uncovered.

7214 of 8672 relevant lines covered (83.19%)

4.15 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
97.92
 pvactools/lib/filter_regtools_results.py
1
96.0
 pvactools/lib/load_gtf_data.py
1
90.0
 pvactools/tools/pvacsplice/allele_specific_cutoffs.py
1
90.0
 pvactools/tools/pvacsplice/binding_filter.py
1
97.14
 pvactools/tools/pvacsplice/coverage_filter.py
1
97.22
 pvactools/tools/pvacsplice/download_example_data.py
1
96.55
 pvactools/tools/pvacsplice/generate_aggregated_report.py
1
91.67
 pvactools/tools/pvacsplice/identify_problematic_amino_acids.py
1
90.0
 pvactools/tools/pvacsplice/top_score_filter.py
1
93.75
 pvactools/tools/pvacsplice/transcript_support_level_filter.py
1
90.0
 pvactools/tools/pvacsplice/valid_alleles.py
2
84.91
 0.1% pvactools/lib/calculate_reference_proteome_similarity.py
2
95.12
 pvactools/lib/combine_inputs.py
2
93.75
 -6.25% pvactools/lib/sort.py
3
96.43
 pvactools/lib/fasta_to_kmers.py
3
87.24
 -0.28% pvactools/lib/pipeline.py
3
55.17
 -2.52% pvactools/tools/main.py
4
85.19
 pvactools/lib/print_log.py
5
50.0
 pvactools/tools/pvacsplice/calculate_reference_proteome_similarity.py
5
50.0
 pvactools/tools/pvacsplice/net_chop.py
5
50.0
 pvactools/tools/pvacsplice/netmhc_stab.py
6
91.92
 -0.0% pvactools/lib/output_parser.py
6
89.29
 pvactools/lib/prediction_class_utils.py
6
79.31
 -0.25% pvactools/tools/pvacvector/run.py
9
88.24
 -1.3% pvactools/lib/top_score_filter.py
9
81.25
 pvactools/tools/pvacsplice/main.py
13
90.08
 pvactools/lib/splice_pipeline.py
14
90.5
 -0.58% pvactools/lib/aggregate_all_epitopes.py
20
85.77
 -1.65% pvactools/lib/input_file_converter.py
24
81.82
 pvactools/lib/junction_to_fasta.py
24
85.37
 pvactools/tools/pvacsplice/run.py
75
21.88
 pvactools/tools/pvacsplice/generate_protein_fasta.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
85.77
 -1.65% pvactools/lib/input_file_converter.py
1
79.31
 -0.25% pvactools/tools/pvacvector/run.py
1
88.76
 2.96% pvactools/lib/net_chop.py
1
92.77
 -0.31% pvactools/lib/fasta_generator.py
Jobs
ID Job ID Ran Files Coverage
1 9305493487.1 114
83.13
 GitHub Action Run
2 9305493487.2 114
83.16
 GitHub Action Run
3 9305493487.3 114
83.16
 GitHub Action Run
4 9305493487.4 114
83.02
5 9305493487.5 114
83.13
 GitHub Action Run
Source Files on build 9305493487