angelolab / ark-analysis / 8839412992

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Generalized masking (#1092)

* init

* tests

* notebook

* use ez_seg.composite.composite_builder

* fix composite_dir if statement

* use _create_object_mask instead of create_mask

* remove squidpy requirement

* remove dask dependecy

* pycodestyle

* notebook updates

* notebook tweaks

* feedback tweaks

* feedback tweaks II

* pin torchdata

* pin pytorch

* remove pytorch pin

* Test with torch==2.2.0, this worked with Kausi

* Handle case where composite_directory needs explicit conversion to pathlib.Path if of type str

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Co-authored-by: alex-l-kong <alkong@ucdavis.edu>

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