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Clinical-Genomics / cg / 8828626981
86%

Build:
DEFAULT BRANCH: master
Ran 25 Apr 2024 07:27AM UTC
Jobs 1
Files 543
Run time 1min
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25 Apr 2024 07:25AM UTC coverage: 84.447% (+0.02%) from 84.427%
8828626981

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github

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Add pre-analysis quality check service (#2886) (minor)

### Added

- Sequencing quality check service
- Sequencing quality checks, dependent on preparation category, workflow, and priority

### Removed

- The use_read_count_threshold property on the AnalysisAPI
- The sequencing_qc property from the Sample model

### Updated

- Ready check of analyses to be analysed in MIP and BALSAMIC

146 of 173 new or added lines in 23 files covered. (84.39%)

4 existing lines in 3 files now uncovered.

19525 of 23121 relevant lines covered (84.45%)

0.84 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
91.23
0.44% cg/meta/workflow/balsamic.py
1
95.65
cg/services/quality_controller/quality_checks/checks.py
2
62.69
0.0% cg/cli/workflow/microsalt/base.py
2
50.7
0.0% cg/cli/workflow/mutant/base.py
10
35.4
-1.21% cg/meta/workflow/mutant.py
11
81.03
cg/services/quality_controller/quality_checks/utils.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
89.05
-0.25% cg/meta/workflow/nf_analysis.py
1
91.23
0.44% cg/meta/workflow/balsamic.py
2
35.4
-1.21% cg/meta/workflow/mutant.py
Jobs
ID Job ID Ran Files Coverage
1 8828626981.1 25 Apr 2024 07:27AM UTC 543
84.45
Source Files on build 8828626981
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  • List 543
  • Changed 16
  • Source Changed 0
  • Coverage Changed 16
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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