axondeepseg / axondeepseg / 8778578372

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Support unmyelinated axons in morphometrics (#796)

* Added unmyelinated axon argument in launch_morphometrics_computation

* Added unmyelinated axon suffix (_seg-uaxon)

* Add detailed description of -u flag

* Ignore u-axon preds as inputs for batch morphometrics

* Extract mask loading into a fn and load uaxon when necessary

* Support uaxon in morphometrics and validate input arguments

* Save index image on top of uaxon mask

* Use different default morphometric filename in unmyelinated mode

* PEP8 lint and support batch uaxon morphometrics

* Warn user that -b is ignored in unmyelinated mode

* Add tests for morphometrics unmyelinated mode

* Document morphometrics -u flag

* Fix morphometrics test setup method

24 of 27 new or added lines in 1 file covered. (88.89%)

1163 of 1307 relevant lines covered (88.98%)

2.67 hits per line