Clinical-Genomics / cg / 8718069403

86%

Build Type

push

github

Committed by web-flow

Commit Message

Remove bcl2fastq sequencing parsers (#3132)(minor)

Removed all logic regarding parsing sequencing metrics from `bcl2fastq` flow cells and simplified the module hierarchy .

### Changed

- Removed the bcl converter parameter from all the finish functions
- Deleted functions, modules, tests and fixtures of sequencing metric parsing of bcl2fastq
- Moved the logic for parsing BCLConvert sequencing metrics directly to the sequencing metrics API in `cg/apps/sequencing_metrics_parser/api.py` (before this API evaluated the bcl converter and called the respective parser).
- Moved and refactored the tests for BCLConvert sequencing metrics parsing to the API tests
- Moved some fixtures to fixture plugins

Run Details

28 of 29 new or added lines in 3 files covered. (96.55%)

1 existing line in 1 file now uncovered.

19467 of 23028 relevant lines covered (84.54%)

0.85 hits per line