Clinical-Genomics / cg / 8686188841

86%

Build Type

push

github

Committed by web-flow

Commit Message

remove bcl converter from CLI (#3107)(minor)

Removal of bcl2fastq option from CLI commands:
```shell
cg demultiplex samplesheet create
cg demultiplex flow-cell
cg demultiplex finish flow-cell
```

### Changed

- Parameter `bcl_converter` od sample sheet API function `get_or_create_sample_sheet` from mandatory to optional set to `None` by default.

### Removed

- `@OPTION_BCL_CONVERTER` decorator
- `bcl_converter` parameter from all CLI commands
- CLI test functions
---------

Co-authored-by: ChristianOertlin <christian.oertlin@scilifelab.se>

Run Details

6 of 6 new or added lines in 4 files covered. (100.0%)

6 existing lines in 4 files now uncovered.

19697 of 23259 relevant lines covered (84.69%)

0.85 hits per line