angelolab / ark-analysis / 8354045819

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Don't require user to have all pixel SOM clusters represented during assignment (#1124)

* Don't require num_pixel_clusters to be set

* Add accessible param to pixel_som_clustering.generate_som_avg_files to not require all SOM clusters to be represented

* Add testing to ensure correctness of functions

* Handle case where not all SOM clusters end up in the mapping file

* In the case an overwrite flag is set prior to any SOM clusters actually being written, then don't attempt to drop

* Make sure if overwrite is set, to reset the SOM clusters seen

2137 of 2396 branches covered (89.19%)

Branch coverage included in aggregate %.

6 of 7 new or added lines in 3 files covered. (85.71%)

4105 of 4280 relevant lines covered (95.91%)

5.72 hits per line