angelolab / ark-analysis / 8023984973

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General CI Updates (#1114)

* applied fix

* ci adjustments

* macos-14 runner -> macos-13

* attempting to sort feather file columns

* ci fixes, enforce_order=False test

* fixed tests, pixel clustering adjustments

* debug CI step added, print local files / folders

* cache name testing

* cache name testing 2

* cache name testing 3

* cache debug save directory

* cache debug save directory 2

* cache debug save directory 3

* cache debug save directory 3 -- fix indent

* cache debug save directory 4

* removed ~ and expanduser()

* ci flag print statement fix

* try tree instead of ls for ci debug

* try tree for macOS

* print dataset names

* print pwd of CI macOS

* print statement to see if image_data exists

* print statement to see if image_data exists 2

* print statement to see if image_data exists 3

* print in fixture

* set dataset_download fixture as class

* check if subdirs in dataset_cache_path exist

* print cache file tree on macos

* print cache + dataset dir

* use lsd --tree and check dataset config-level existence

* ssh gha debugging with upterm

* use tmate for debugging, add workflow dispatch

* try debug workflow dispatch

* try debug workflow dispatch v2

* try debug workflow dispatch v2

* dataset_cache_dir's scope is session

* tmate -> upterm

* debug ci

* using ~/.cache/huggingface instead of ./data/cache

* tree new cache directory

* using None

* cache path adjustments

* revert cache dir to ./data/cache

* use env vars for path

* removed cwd

* added env variable for GITHUB_WORKSPACE

* check huggingface configs

* change dataset paths on cache w.r.t to OS

* modifying method of getting dataset paths

* append to dictionary of paths

* pyproject file adjustment

* removed gha ssh workflow

* removed . path for coveralls

* debug coveralls

* removed debug workflow

* set lcov reporting explicitly in test.yml, remove it from the list of addopts

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