biocore / mg-scripts / 8024026518

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log-parsing (#127)

* WIP: log-parsing

example log-parsing for ConvertJob, based on sample log files.
sample logs for other errored-jobs and unit tests are needed.

* Added support and tests for ConvertJob, NuQCJob

FastQCJob still in progress

* test fix for CI

* debug CI

* debug CI

* debug CI: Exception not being caught

* flake8

* Error-handling appears normal. Test re-written.

Test rewritten to be perhaps more flexible.

* test

* fix error in new test

'Logs' -> 'logs' in pathing. Doesn't affect MacOSX systems since we default to case-insensitive fs.
However on Ubuntu and CI, paths are case-sensitive, hence the bug appears.

* FastQCJob test added

* cleanup

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Co-authored-by: charlie <charlie@stacksubuntu.lan>

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